Subject: About the extension "ax--Atom name translation"
From: ethernet3399
Date: Dec 5, 2005

Next: 40


Recently I try the extension Atom name translation, but I got the following error message from Python shell:

File /usr/local/NMR_software/sparky-ShiGH/python/sparky/atoms.py, line 169, in is_standard_name
return atomnames.standard_group_atom_table.has_key(group_symbol, atom_name)
TypeError: has_key() takes exactly 1 argument (2 given)

As if this extension concerns these two files: atomnames.py and atoms.py.

In the atoms.py file, line 168-169:

168 def is_standard_name(group_symbol, atom_name):
169 return atomnames.standard_group_atom_table.has_key(group_symbol, atom_name)

While in file atomnames.py, have these lines with line number 422-436:

422 def group_atom_table(group_to_atom_list):
423
424 t = {}
425 for g in group_to_atom_list.keys():
426 for a in group_to_atom_list[g]:
427 t[(g,a)] = 1
428 return t
429
430 # -----------------------------------------------------------------------------
431 # Setup standard tables that include proteins, dna, and rna names
432 #
433 standard_atoms_by_group = {}
434 merge_table(protein_atoms_by_group, standard_atoms_by_group)
435 merge_table(dna_rna_atoms_by_group, standard_atoms_by_group)
436 standard_group_atom_table = group_atom_table(standard_atoms_by_group)

I dont find the class standard_group_atom_table has this attribute has_key, or this attribute is definited in other modules?
And how to solve the problem list above? Who can help?