Subject: Re: [nmr_sparky] Need to Convert Axis
From: Woonghee Lee
Date: Oct 30, 2018

Previous: 1423 Next: 1426


If you ran install.py to install the program, it should be

$ /Application/nmrfam-sparky-mac/NMRFAM-SPARKY.app/Contents/Resources/bin/ucsfdata ....

Woonghee

On Tue, Oct 30, 2018 at 4:52 PM Gibson, James gibsoj3@... [nmr_sparky] nmr_sparky@yahoogroups.com wrote:
 

Now, I see it is almost identical to that question.  Further question - do I have to be in a certain directory to run the ucsfdata command?  I am running it from a shell on a Mac and I keep getting a command not found error.

James

From: nmr_sparky@yahoogroups.com [nmr_sparky@yahoogroups.com ]
Sent: Tuesday, October 30, 2018 11:10 AM
To: nmr_sparky
Subject: Re: [nmr_sparky] Need to Convert Axis
 

Dear James,

Your question is very similar to the one just below in the forum.
You can use ucsfdata to check and change your nuclei.

* To change a nucleus for dimension 2
$ ucsfdata -a2 15N new_file.ucsf old_file.ucsf 

* If you need to change dimension 3 again
$ ucsfdata -a3 15N new_file2.ucsf new_file.ucsf

Best,
Woonghee



On Tue, Oct 30, 2018 at 10:05 AM Gibson, James gibsoj3@... [nmr_sparky] nmr_sparky@yahoogroups.com wrote:
 

Hi, I ran a 3D HNN experiment.  After running the conversion from Bruker through NMRpipe, I ended up with axes of H, N, and N.  However, when I read the file in sparky, I am getting axes H, H, H although the chemical shift is clearly correct for 15N.  Is there any way I can change these axes to the correct H, N, N?  It is messing up my peak picking.

James