Subject: Sparky peak picking
From: Liz Kish
Date: Dec 28, 2017

Next: 1290


Dear All,

Happy holidays. I am attempting to peak pick with APES (NMRFAMUtilitiesAutomated peak picking by APES). I have several spectra including HSQC (N), HSQC (C), NHCO, HNCA, HNCACB, HNCOCA, NOESYHSQC, HNCACO, and CBCACONH. The sequence file seems to read fine, I see the correct sequence in the window when I do sq. When I click Run APES I receive this error message: 

Traceback (most recent call last):
  File /usr/local/src/nmrfam-sparky-linux/python/lib-tk/Tkinter.py, line 1489, in __call__
    return self.func(*args)
  File /usr/local/src/nmrfam-sparky-linux/python/sparky/apes.py, line 380, in pick_cb
    self.make_sequence_filter()
  File /usr/local/src/nmrfam-sparky-linux/python/sparky/apes.py, line 216, in make_sequence_filter
    atms = atomnames.protein_atoms_by_group_2[seq]
KeyError: X


Does anyone have any idea what the problem could be? 

Thanks a lot,
Liz