Subject: Re: [nmr_sparky] Re: Side chain assignment of small peptide.
From: Woonghee Lee
Date: Nov 23 4:49 PM

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For 3D TOCSY or COSY,  you will want to see HX from magnetization transfer to be on vertical axis, while CX is put to the Z and attached HX to be horizontal. It is just my personal preference and there may be people want to make a strip horizontally elongated, too.

On Nov 23, 2017 6:42 PM, woonghee791113@... [nmr_sparky] nmr_sparky@yahoogroups.com wrote:
 

Dear Sohee,


You can try either automatic and manual, or hybrid approach. As your protein is so small, I think you can just try PINE. If your C-HSQC is constant time, you will get very accurate results with PINE.3. Just type ep in the NMRFAM-Sparky and add your experiments, and click submit. To bootstrap your current assignments to enhance the results, enable Use pre-assignment. 

1. Use of PINE-SPARKY.2 plugin for automated assignment

2. PINE-SPARKY extensions for validation

Let me know if you need further help.

Best,
Woonghee