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Command: transparency

transparency  spec   percent  [ target  string ]

The transparency command sets the transparency of atomic representations, molecular surfaces, and volume (map) isosurfaces to the specified percent, where 0% is completely opaque and 100% is completely transparent, without otherwise changing colors. See also: color, surface, volume

The target option allows acting on only a subset of the possible displays of a given atom, residue, etc. The string can be any combination of the following letters, without commas or spaces:

The default target is s, surfaces only.

UCSF Resource for Biocomputing, Visualization, and Informatics / October 2017