/ . / chimera / actions.py
Functions
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colorByElement
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colorByElement (
attr=None,
appliesToVar=None,
hetero=None,
)
Exceptions
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UserError( "Nothing applicable to color by element" )
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colorAtomByElement
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colorAtomByElement (
a,
attrs=None,
hetero=None,
)
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setLabel
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setLabel (
attr,
fixed=None,
warnLarge=None,
)
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atomAndBondSurfacePieces
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atomAndBondSurfacePieces ( atoms, bonds )
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selAtoms
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selAtoms (
noneReturnsAll=None,
implied=None,
create=None,
)
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showSurface
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showSurface ( warnLarge=None )
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setLineWidth
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setLineWidth ( lw )
Set linewidth of molecule bonds
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surfacePieceAtomsAndBonds
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surfacePieceAtomsAndBonds ( plist, create=None )
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surfacesWithAtomsAndBonds
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surfacesWithAtomsAndBonds ()
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extendSelection
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extendSelection (
objects,
objectName,
noneReturnsAll=None,
implied=None,
create=None,
)
Object name can be "atoms", "bonds", "residues", or "molecules"
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setRibbonCustom
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setRibbonCustom ( xs )
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setSurfaceRepr
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setSurfaceRepr ( srMode )
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setRibbonDraw
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setRibbonDraw ( rMode )
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selBonds
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selBonds (
noneReturnsAll=None,
implied=None,
create=None,
)
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selectedSurfacePieces
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selectedSurfacePieces (
excludeMSMS=None,
noneReturnsAll=None,
implied=None,
)
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setDisplay
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setDisplay ( val )
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setAtomBondDraw
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setAtomBondDraw ( aMode, bMode )
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setResLabel
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setResLabel ( labelFmt, selection=None )
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changeSurfsFromCustom
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changeSurfsFromCustom ( mlist=None )
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transpSurf
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transpSurf ( amount )
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colorNonMSMSSurfaces
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colorNonMSMSSurfaces ( color )
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hideSurface
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hideSurface ()
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setColor
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setColor ( color, appliesToVar=None )
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allObjects
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allObjects ( objectName )
Object name can be "atoms", "bonds", "residues", or "molecules"
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selResidues
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selResidues (
noneReturnsAll=None,
implied=None,
create=None,
)
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selMolecules
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selMolecules (
noneReturnsAll=None,
implied=None,
create=None,
)
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addImpliedSelection
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addImpliedSelection (
objects,
objectName,
create=None,
noneReturnsAll=None,
)
Object name can be "atoms", "bonds", "residues", or "molecules"
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setResidueDisplay
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setResidueDisplay ( val )
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displayResPart
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displayResPart (
side=None,
backbone=None,
other=None,
trace=None,
add=None,
)
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delAtomsBonds
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delAtomsBonds ()
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