HappyDoc Generated Documentation ./chimera/actions.py

. / chimera / actions.py 

Functions   
  colorByElement 
colorByElement (
        attr=None,
        appliesToVar=None,
        hetero=None,
        )
Exceptions   

UserError( "Nothing applicable to color by element" )

  colorAtomByElement 
colorAtomByElement (
        a,
        attrs=None,
        hetero=None,
        )
  setLabel 
setLabel (
        attr,
        fixed=None,
        warnLarge=None,
        )
  focus 
focus ()
  atomAndBondSurfacePieces 
atomAndBondSurfacePieces ( atoms,  bonds )
  selAtoms 
selAtoms (
        noneReturnsAll=None,
        implied=None,
        create=None,
        )
  showSurface 
showSurface ( warnLarge=None )
  setLineWidth 
setLineWidth ( lw )

Set linewidth of molecule bonds

  surfacePieceAtomsAndBonds 
surfacePieceAtomsAndBonds ( plist,  create=None )
  surfacesWithAtomsAndBonds 
surfacesWithAtomsAndBonds ()
  extendSelection 
extendSelection (
        objects,
        objectName,
        noneReturnsAll=None,
        implied=None,
        create=None,
        )

Object name can be "atoms", "bonds", "residues", or "molecules"

  setRibbonCustom 
setRibbonCustom ( xs )
  setSurfaceRepr 
setSurfaceRepr ( srMode )
  setPivot 
setPivot ()
  setRibbonDraw 
setRibbonDraw ( rMode )
  molecules 
molecules ()
  showOnly 
showOnly ()
  selBonds 
selBonds (
        noneReturnsAll=None,
        implied=None,
        create=None,
        )
  selectedSurfacePieces 
selectedSurfacePieces (
        excludeMSMS=None,
        noneReturnsAll=None,
        implied=None,
        )
  r3to1 
r3to1 ( rType )
  setDisplay 
setDisplay ( val )
  setAtomBondDraw 
setAtomBondDraw ( aMode,  bMode )
  setResLabel 
setResLabel ( labelFmt,  selection=None )
Exceptions   

UserError( resAttrDict.errMsg )

  changeSurfsFromCustom 
changeSurfsFromCustom ( mlist=None )
  transpSurf 
transpSurf ( amount )
  colorNonMSMSSurfaces 
colorNonMSMSSurfaces ( color )
  hideSurface 
hideSurface ()
  setColor 
setColor ( color,  appliesToVar=None )
  allObjects 
allObjects ( objectName )

Object name can be "atoms", "bonds", "residues", or "molecules"

  selResidues 
selResidues (
        noneReturnsAll=None,
        implied=None,
        create=None,
        )
  selMolecules 
selMolecules (
        noneReturnsAll=None,
        implied=None,
        create=None,
        )
  addImpliedSelection 
addImpliedSelection (
        objects,
        objectName,
        create=None,
        noneReturnsAll=None,
        )

Object name can be "atoms", "bonds", "residues", or "molecules"

  setResidueDisplay 
setResidueDisplay ( val )
  displayResPart 
displayResPart (
        side=None,
        backbone=None,
        other=None,
        trace=None,
        add=None,
        )
  delAtomsBonds 
delAtomsBonds ()
Classes   

resAttrDict


This document was automatically generated Wed Jul 9 15:49:34 2008 by HappyDoc version 3.1