|
|
changeAtom
|
changeAtom (
atom,
element,
geometry,
numBonds,
autoClose=None,
name=None,
)
|
Exceptions
|
|
|
ParamError( "Atom already has more bonds than requested.\n" "Either delete some bonds or choose a different number" " of requested bonds." )
|
|
|
|
placeHelium
|
placeHelium (
resName,
model=None,
position=None,
)
|
|
|
placePeptide
|
placePeptide (
sequence,
phi,
psi,
model=None,
position=None,
rotlib=None,
chainID=None,
)
|
Exceptions
|
|
|
ValueError( "No sequence supplied" )
ValueError( "Sequence contains non-alphabetic characters" )
ValueError( "Unrecognized protein 1-letter code:" " %s" % c )
|
|
|
|
setBondLength
|
setBondLength (
bond,
bondLength,
movingSide=None,
status=None,
)
|
|
|
bondLength
|
bondLength (
e1,
geom,
e2,
a2info=None,
knownSingle=None,
)
|
|
|
placeFragment
|
placeFragment (
fragment,
resName,
model=None,
position=None,
)
|
|