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Subdirectories   

Accelerators

AddAttr

AddH

Add hydrogens to structures

AtomDensity

Benchmark

Bld2VRML

BugReport

BuildStructure

CGLtk

Generically useful CGL Tk additions

CGLutil

Generically useful modules

CalcAttr

Categorizer

Categorize atoms into solvent, ligand, etc. categories

ChemGroup

Find chemical groups in a structure

CollaboratoryCORBA

Collaboratory

Initialization code for the Collaboratory Chimera Extension

ColorSS

ColorZone

ConstrainedMove

DBPuppet

DelphiViewer

View Delphi output in Chimera

Demo

DockPrep

EnsembleMatch

FindHBond

Find hydrogen bonds

FitMap

GraspSurface

Icosahedron

Ilabel

Intersurf

Lighting

MainChain

MatchDomains

MatchMaker

MeasureVolume

Midas

Emulate UCSF Midas command set

MinrmsPlot

ModelBrowser

ModelClip

ModelPanel

GUI to perform functions on models

MovieRecorder

Movie

MultAlignViewer

MultiScale

NeedlemanWunsch

NucleicAcids

OpenSave

Standard open/save panels for Chimera

PBReader

Show pseudobonds described in a file

PDBmatrices

PathLength

Phantom

PipesAndPlanks

PythonModel

Access Chimera OpenGL drawing

ReadMS

ReadXYZ

ResProp

Color residues by property (e.g. aliphatic)

RibbonStyleEditor

ScaleBar

SessionUtil

Shiny

ShowAttr

SimpleSession

Save/restore most aspects of a Chimera modeling session

SmithWaterman

StructMeasure

Interface to structure measurements (e.g. distances, angles)

StructSeqAlign

SurfaceAreaVolume

SurfaceCallback

SurfaceCap

SurfaceColor

SurfaceZone

Surfnet

SwapRes

Change residue side chains

Texturer

Convenience classes for making small 2D textures

Trajectory

UndoMove

UnitCell

VRMLoutput

ViewDock

VolumeData

VolumeEraser

VolumePath

VolumeViewer

WriteMol2

_LightViewer

_LightViewer module

_align

Interface to the C++ code for reading results from align_O_matic

_amber

_amber module

_chimera

Declarations of basic Chimera classes (Molecule, Atom, etc.)

_closepoints

_closepoints module

_collaboratory

Collaboratory internal modules for speeding up pickling

_contour

_contour module

_cubes

_cubes module

_distances

_distances module

_interpolate

_interpolate module

_multiscale

_multiscale module

_pm

_pm module

_surface

_surface module

_surfacecap

_surfacecap module

_surfnet

_surfnet module

_sw

_sw module

_volume

_volume module

_vrml

_vrml module

blast

chimera

Chimera module

fonts

mpose

otf

pdborder

registration


This document was automatically generated Thu Feb 02 15:18:06 2006 by HappyDoc version 3.0.a1