preset apply pub 3;repr cpk;show;focus from MultAlignViewer.MAViewer import MAViewer from chimera.extension import manager mav = [inst for inst in manager.instances if isinstance(inst, MAViewer)][-1] if hasattr(mav, 'loadScfFile'): mav.hideHeaders(mav.headers(shownOnly=True)) mav.usePhylogenyFile("http://www.cgl.ucsf.edu/chimera/consurf/TheTree.txt", askReorder=False) mav.loadScfFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.scf") mav.useColoringFile(None) else: mav.hideHeaders(mav.seqCanvas.headerDisplayOrder()) mav.usePhylogenyFile("http://www.cgl.ucsf.edu/chimera/consurf/TheTree.txt") mav.regionBrowser.loadScfFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.scf") from MultAlignViewer.prefs import RC_BLACK mav.seqCanvas.setColorFunc(RC_BLACK) mav.readHeaderFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.hdr")