Import system modules used in this example.
The regular expression module,
Import Chimera modules used in this example.
The
Function
Create a button in the toolbar.
The first argument to re
, is used for matching atom names.
The operating system module, os
, is used for constructing the icon
file name (see below).
import re
import os
chimera
module is needed to access the molecular data.
import chimera
mainchain
sets the display status of atoms
and requires no arguments. The body of the function is
identical to the example described in
Molecular Editing Using Python.
def mainchain():
MAINCHAIN = re.compile("^(N|CA|C)$", re.I)
for m in chimera.openModels.list(modelTypes=[chimera.Molecule]):
for a in m.atoms:
a.display = MAINCHAIN.match(a.name) != None
chimera.tkgui.app.toolbar.add
is the icon,
which is either the path to an image file, or the name of a standard
Chimera icon (which is the base name of an image file found in the
"share/chimera/images" directory in the Chimera installation directory).
In this case, since ToolbarButton.tiff
is not an absolute path, the
icon will be looked for under that name in both the current directory
and in the Chimera images directory.
The second argument is the Python function to be called when the button
is pressed (a.k.a., the "callback function").
The third argument is a short description of what the button does
(used typically as balloon help).
The fourth argument is the URL to a full description.
For this example the icon name is ToolbarButton.tiff
;
the Python function is mainchain
;
the short description is "Show Main Chain";
and there is no URL for context help.
chimera.tkgui.app.toolbar.add('ToolbarButton.tiff', mainchain, 'Show Main Chain', None)