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/ . / chimera / actions.py
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Functions
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colorByElement
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colorByElement (
attr="color",
appliesToVar=None,
hetero=False,
)
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Exceptions
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UserError( "Nothing applicable to color by element" )
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colorAtomByElement
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colorAtomByElement (
a,
attrs=[ "color" ],
hetero=False,
)
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selMolecules
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selMolecules ( noneReturnsAll=True )
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setRealm
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setRealm ( realm )
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selBonds
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selBonds ( noneReturnsAll=True )
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instances
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instances (
noneReturnsAll=True,
adjustToLevel=None,
doMain=True,
doBonds=True,
)
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Exceptions
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ValueError, "cannot return 'chains'"
ValueError, "cannot compute 'chains'"
LimitationError( "No atoms/bonds selected. Currently," " menu Actions apply only to atom/bond selections." )
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selAtoms
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selAtoms ( noneReturnsAll=True )
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showSurface
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showSurface ()
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unselAtoms
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unselAtoms ( noneReturnsAll=True )
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unselBonds
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unselBonds ( noneReturnsAll=True )
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selResidues
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selResidues ( noneReturnsAll=True )
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unselMolecules
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unselMolecules ( noneReturnsAll=True )
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setRibbonCustom
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setRibbonCustom ( xs )
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realmApplies
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realmApplies ()
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setSurfaceRepr
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setSurfaceRepr ( srMode )
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registerRealmChangeCB
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registerRealmChangeCB ( cb )
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setRibbonDraw
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setRibbonDraw ( rMode )
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selChains
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selChains ( noneReturnsAll=True, asDict=False )
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Exceptions
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AssertionError, "'asDict' and 'nRA' both true"
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setDisplay
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setDisplay ( val )
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setAtomBondDraw
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setAtomBondDraw ( aMode, bMode )
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instanceApply
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instanceApply (
func,
bondFunc=None,
noneReturnsAll=True,
adjustToLevel=None,
)
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modeLevel
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modeLevel ()
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Exceptions
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AssertionError, "current mode not in _modeLevel values"
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deregisterModeChangeCB
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deregisterModeChangeCB ( cb )
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changeSurfsFromCustom
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changeSurfsFromCustom ( mlist=None )
turn off custom coloring for selected surfaces
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transpSurf
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transpSurf ( amount )
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hideSurface
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hideSurface ()
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deregisterRealmChangeCB
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deregisterRealmChangeCB ( cb )
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unselChains
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unselChains ( noneReturnsAll=True )
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registerModeChangeCB
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registerModeChangeCB ( cb )
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setResidueDisplay
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setResidueDisplay ( val )
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unselResidues
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unselResidues ( noneReturnsAll=True )
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displayResPart
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displayResPart (
side=0,
backbone=0,
other=0,
trace=0,
add=0,
)
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