Usage:
distance atom1 atom2

Usage:
~distance [ atom1 atom2 ]

Usage:
~distance all

Distance dynamically calculates and displays distances in angstroms between specified pairs of atoms. A dotted line is drawn between each pair of atoms for which a distance calculation is active. Atom1 and atom2 may be any two atoms in the displayed models. The atoms can be specified collectively using the word selected, sel, or picked if the current selection contains only the two atoms of interest.

The distance calculation may be deactivated using ~distance with the same atom specification; if no atom specification is given, or the keyword all is used, all active distances are removed.

Examples:

distance #1:12@CA #0:47@CA
- measure distance between alpha carbons in model 1, residue 12 and model 0, residue 47
~distance #1:12@CA #0:47@CA
- stop measuring and displaying the distance between the two atoms

See also: watch, the Distances panel