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Methods
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Atom_created
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Atom_created ( self, atoms )
TODO optimization: only call request_ids() ONCE for the whole atoms loop
request_ids is a network call, and therefore very slow to do many times
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Atom_deleted
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Atom_deleted ( self, atoms )
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Atom_modified
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Atom_modified ( self, atoms )
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Bond_created
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Bond_created ( self, bonds )
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Bond_deleted
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Bond_deleted ( self, bonds )
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Bond_modified
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Bond_modified ( self, bonds )
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Camera_created
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Camera_created ( self, arg )
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Camera_modified
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Camera_modified ( self, arg )
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ChatCommand
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ChatCommand (
self,
triggerName,
closure,
data,
)
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Lens_created
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Lens_created ( self, lenses )
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Lens_deleted
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Lens_deleted ( self, lenses )
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Lens_modified
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Lens_modified ( self, lenses )
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MSMSModel_created
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MSMSModel_created ( self, models )
NYI
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MSMSModel_modified
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MSMSModel_modified ( self, models )
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MaterialColor_created
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MaterialColor_created ( self, arg )
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MaterialColor_modified
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MaterialColor_modified ( self, arg )
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Material_created
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Material_created ( self, arg )
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MidasCommand
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MidasCommand (
self,
triggerName,
closure,
data,
)
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Molecule_created
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Molecule_created ( self, molecules )
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Molecule_deleted
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Molecule_deleted ( self, molecules )
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Molecule_modified
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Molecule_modified ( self, molecules )
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OpenModels_modified
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OpenModels_modified ( self, openmodels )
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OpenState_created
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OpenState_created ( self, openstates )
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OpenState_deleted
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OpenState_deleted ( self, openstates )
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OpenState_modified
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OpenState_modified ( self, openstates )
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PointerPosition
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PointerPosition (
self,
coords,
state,
)
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PseudoBondGroup_created
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PseudoBondGroup_created ( self, pseudobondgroups )
NYI
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PseudoBondGroup_deleted
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PseudoBondGroup_deleted ( self, pseudobondgroups )
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PseudoBondGroup_modified
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PseudoBondGroup_modified ( self, pseudobondgroups )
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PseudoBond_created
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PseudoBond_created ( self, pseudobonds )
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PseudoBond_deleted
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PseudoBond_deleted ( self, pseudobonds )
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PseudoBond_modified
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PseudoBond_modified ( self, pseudobonds )
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Residue_created
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Residue_created ( self, residues )
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Residue_deleted
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Residue_deleted ( self, residues )
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Residue_modified
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Residue_modified ( self, residues )
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SharedState_created
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SharedState_created ( self, sharedStates )
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SharedState_deleted
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SharedState_deleted ( self, sharedStates )
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SharedState_modified
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SharedState_modified ( self, sharedStates )
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TextureColor_created
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TextureColor_created ( self, texture_colors )
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TextureColor_modified
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TextureColor_modified ( self, texture_colors )
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Texture_created
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Texture_created ( self, textures )
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Texture_modified
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Texture_modified ( self, textures )
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UpdateModelAssociations
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UpdateModelAssociations (
self,
trigger,
ignore,
update,
)
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VRMLModel_created
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VRMLModel_created ( self, models )
NYI (not yet implemented)
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VRMLModel_deleted
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VRMLModel_deleted ( self, models )
NYI (not yet implemented)
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VRMLModel_modified
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VRMLModel_modified ( self, models )
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Viewer_modified
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Viewer_modified ( self, arg )
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__init__
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__init__ ( self, parent )
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build
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build (
self,
triggerName,
closure,
data,
)
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build_selection
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build_selection (
self,
triggerName,
closure,
data,
)
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close_model
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close_model (
self,
trigger,
ignore,
models,
)
called if the user closes the model (not the same as deleting the molecule object)
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Exceptions
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RuntimeError, "Unknown type of model: %s" % model
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close_molecule
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close_molecule ( self, mol )
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close_msmsmodel
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close_msmsmodel ( self, model )
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close_pseudobondgroup
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close_pseudobondgroup ( self, model )
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close_vrmlmodel
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close_vrmlmodel ( self, model )
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delete_msmsmodel
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delete_msmsmodel ( self, models )
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load_vrmlmodel
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load_vrmlmodel ( self, filename )
special routine that overrides the normal VRML loading function
so we can store the VRML model source code to send to the other collaboratory nodes
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open_model
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open_model (
self,
trigger,
ignore,
models,
)
Model opening is a "special case"
Just because we got a "molecule created" event doesn't mean that
the model was added to chimera.openModels (IE code created a model programmatically and
didn't add it to the list of open models)
Worse, a molecule could be "created" and added later
So we add what is known as a "chimera.openModels" addAddHandler,
which gets called when a model is added to openModels.
We use that to communicate the newly created/added model
to the other collaboratory nodes.
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Exceptions
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RuntimeError, "Unknown type of model: %s" % model
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open_molecule
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open_molecule ( self, mol )
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open_msmsmodel
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open_msmsmodel ( self, model )
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open_pseudobondgroup
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open_pseudobondgroup ( self, pseudobondgroup )
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open_vrmlmodel
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open_vrmlmodel ( self, model )
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registerExtension
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registerExtension (
self,
name,
obj,
)
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