This workgroup meets twice monthly from 9:30-10:45am in BH-413 and is devoted to discussions about network visualization of biological data. A related research project, Visualization and Analysis of Biological Context, was part of the RBVI's recent suscessul competitive renewal application. If you are interested in participating in this workgroup, please contact Prof. Thomas Ferrin.
DATE PRESENTER TOPIC 01/29/07 Holly Attkinson Research In Progress report + review of CLANS paper 02/12/07 Scooter Morris + Shoshana Brown Research In Progress report + review of Tulip paper from PLoS CompBio 02/26/07 NO MEETING THIS WEEK 03/12/07 Leonard Apeltsin Research In Progress report 03/26/07 NO MEETING THIS WEEK 04/09/07 Corey Adams Research In Progress report 04/23/07 Shoshana Brown Research In Progress report 05/07/07 Holly Attkinson Use of E-value statistics as a graph metric 05/21/07 Leonard Apeltsin Discussion on Dimensionality 06/04/07 Leonard Apeltsin Review of Bioinformatics 2003 "pattern discovery with fuzzy alignments" paper 06/18/07 NO MEETING THIS WEEK 07/02/07 Everyone So what's next? Discussion/planning our next steps 07/16/07 Summer Break - NO MEETINGS UNTIL OCTOBER 1st 10/1/07 Scooter Plans for Cytoscape 2.6 and discussion about future needs 10/8/07 Everyone Continuation of Cytoscape 2.6 discussion:
- Review of current limitations/bug in older versions
- UCSF Cytoscape 3.0 needs/wish list
10/29/07 Scooter/Shoshana Working meeting on improving the SFLD Loader Rescheduled - date TBD Patsy/Tom/Leonard/Holly/
Shoshana/Scooter/ConradWorking meeting on Network Filtration Protocol manuscript 12/17/07 NO MEETINGS FOR A FEW WEEKS 2/11/08 Scooter/Shoshana 1. SFLD plugin demo
2. Review of research workflow and needs2/25/08 Scooter/Shoshana Continued discussions from last meeting 3/10/08 MEETINGS ON HOLD BECAUSE OF PEOPLE'S TRAVEL SCHEDULES TBA Scooter Layout alternatives to Force-Directed TBA Patsy/Holly/Shoshana Cytoscape applications in the Babbitt lab